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Toward the study of metabolic functions in algal holobionts

 Claire Lippold , Camille Trottier , Clémence Frioux , Marie Chevallier , Simon M Dittami , et al.
4ème Colloque de Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès hal-01576484v1

L'écologie des systèmes

 Damien Eveillard , Anne Siegel , Philippe Vandenkoornhuyse
Mokrane Bouzeghoub et Rémy Mosseri. Les Big Data à Découvert, CNRS éditions, 2017, 978-2-271-11464-8
Chapitre d'ouvrage hal-01575603v1
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Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus

 Delphine Nègre , Méziane Aite , Arnaud Belcour , Clémence Frioux , Loraine Brillet-Guéguen , et al.
Antioxidants , 2019, 8 (11), pp.564. ⟨10.3390/antiox8110564⟩
Article dans une revue hal-02395080v1
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Learning Dynamics with Synchronous, Asynchronous and General Semantics

 Tony Ribeiro , Maxime Folschette , Morgan Magnin , Olivier Roux , Katsumi Inoue
28th International Conference on Inductive Logic Programming, Fabrizio Riguzzi; Elena Bellodi; Riccardo Zese, Sep 2018, Ferrara, Italy. ⟨10.1007/978-3-319-99960-9_8⟩
Communication dans un congrès hal-01826564v1
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First landscape of binding to chromosomes for a domesticated mariner transposase in the human genome: diversity of genomic targets of SETMAR isoforms in two colorectal cell lines

 Aymeric Antoine-Lorquin , Ahmed Arnaoty , Sassan Asgari , Martine Batailler , Linda Beauclair , et al.
2017
Pré-publication, Document de travail hal-01558001v1

A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks

 Vincent Picard , Anne Siegel , Jérémie Bourdon
Journal of Computational Biology, 2017, 24 (8), pp.1--12. ⟨10.1089/cmb.2017.0099⟩
Article dans une revue hal-01552190v1
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Two repeated motifs enriched within some enhancers and origins of replication are bound by SETMAR isoforms in human colon cells

 Aymeric Antoine-Lorquin , Peter Arensburger , Ahmed Arnaoty , Sassan Asgari , Martine Batailler , et al.
Genomics, 2021, 113 (3), pp.1589-1604. ⟨10.1016/j.ygeno.2021.03.032⟩
Article dans une revue hal-03385429v1
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Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models

 Méziane Aite , Marie Chevallier , Clémence Frioux , Camille Trottier , Jeanne Got , et al.
PLoS Computational Biology, 2018, 14 (5), pp.e1006146. ⟨10.1371/journal.pcbi.1006146⟩
Article dans une revue hal-01807842v1

Scalable and exhaustive screening of metabolic functions carried out by microbial consortia

 Clémence Frioux , Enora Fremy , Camille Trottier , Anne Siegel
Bioinformatics, 2018, 34 (17), pp.i934 - i943. ⟨10.1093/bioinformatics/bty588⟩
Article dans une revue hal-01871600v1
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Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data

 Misbah Razzaq , Loïc Paulevé , Anne Siegel , Julio Saez-Rodriguez , Jérémie Bourdon , et al.
PLoS Computational Biology, 2018, 14, pp.1-23. ⟨10.1371/journal.pcbi.1006538⟩
Article dans une revue hal-01897020v1
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Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803

 Ulysse Guyet , Ngoc Thanh Nguyen , Hugo Doré , Julie Haguait , Justine Pittera , et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01707⟩
Article dans une revue hal-02929424v1
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Atelier MoDaL (Multi-Scale Data Links)

 Aurélien Cornet , Christian Barillot , Olivier Dameron , Alban Gaignard , Camille Maumet , et al.
[Rapport de recherche] IRISA, Inria Rennes. 2020
Rapport inserm-02507799v4
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Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks

 Julie Laniau , Clémence Frioux , Jacques Nicolas , Caroline Baroukh , Maria-Paz Cortés , et al.
PeerJ, 2017, 5, pp.e3860. ⟨10.7717/peerj.3860⟩
Article dans une revue hal-01635688v1
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Inductive Learning from State Transitions over Continuous Domains

 Tony Ribeiro , Sophie Tourret , Maxime Folschette , Morgan Magnin , Domenico Borzacchiello , et al.
27th International Conference on Inductive Logic Programming, LNCS, volume 10759, Springer, Cham, pp.124-139, 2018, Inductive Logic Programming, ⟨10.1007/978-3-319-78090-0_9⟩
Chapitre d'ouvrage hal-01655644v3

Toward a better understanding of the plant microbiota

 Victoria Potdevin , Marie Chevallier , Ruben Garrido Oter , Anne Siegel , Stéphane Hacquard , et al.
4ème colloque de Génomique Environnementale, GDR Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès hal-01576743v1
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A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma

 Maxime Folschette , Vincent Legagneux , Arnaud Poret , Lokmane Chebouba , Carito Guziolowski , et al.
BMC Bioinformatics, 2020, 21 (1), pp.18. ⟨10.1186/s12859-019-3316-1⟩
Article dans une revue hal-02095930v4
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État des lieux MoDaL (Multi-Scale Data Links)

 Aurélien Cornet , Christian Barillot , Olivier Dameron , Alban Gaignard , Camille Maumet , et al.
[Rapport de recherche] IRISA, Inria Rennes. 2020
Rapport hal-02557351v1
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Scalable and exhaustive screening of metabolic functions carried out by microbial consortia

 Clémence Frioux , Enora Fremy , Camille Trottier , Anne Siegel
ECCB - 2018 - 17th European Conference on Computational Biology, Sep 2018, Athènes, Greece. pp.i934-i943
Communication dans un congrès hal-01946860v1
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Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

 Sylvain Prigent , Clémence Frioux , Simon M Dittami , Sven Thiele , Abdelhalim Larhlimi , et al.
PLoS Computational Biology, 2017, 13 (1), pp.32. ⟨10.1371/journal.pcbi.1005276⟩
Article dans une revue hal-01449100v1
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