Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks
Julie Laniau
,
Clémence Frioux
,
Jacques Nicolas
,
Caroline Baroukh
,
Maria-Paz Cortés
,
et al.
Article dans une revue
hal-01635688v1
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Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models
Méziane Aite
,
Marie Chevallier
,
Clémence Frioux
,
Camille Trottier
,
Jeanne Got
,
et al.
Article dans une revue
hal-01807842v1
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Atelier MoDaL (Multi-Scale Data Links)
Aurélien Cornet
,
Christian Barillot
,
Olivier Dameron
,
Alban Gaignard
,
Camille Maumet
,
et al.
[Rapport de recherche] IRISA, Inria Rennes. 2020
Rapport
inserm-02507799v4
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Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data
Misbah Razzaq
,
Loïc Paulevé
,
Anne Siegel
,
Julio Saez-Rodriguez
,
Jérémie Bourdon
,
et al.
Article dans une revue
hal-01897020v1
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Scalable and exhaustive screening of metabolic functions carried out by microbial consortia
Clémence Frioux
,
Enora Fremy
,
Camille Trottier
,
Anne Siegel
Article dans une revue
hal-01871600v1
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Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803
Ulysse Guyet
,
Ngoc Thanh Nguyen
,
Hugo Doré
,
Julie Haguait
,
Justine Pittera
,
et al.
Article dans une revue
hal-02929424v1
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A distance for evidential preferences with application to group decision making
Yiru Zhang
,
Tassadit Bouadi
,
Yewan Wang
,
Arnaud Martin
Article dans une revue
hal-03171577v1
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Cytosine methylation of mature microRNAs inhibits their functions and is associated with poor prognosis in glioblastoma multiforme
Mathilde Cheray
,
Amandine Etcheverry
,
Camille Jacques
,
Romain Pacaud
,
Gwenola Bougras-Cartron
,
et al.
Article dans une revue
hal-02500622v1
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Categorial Dependency Grammars: Analysis and Learning (Invited Talk)
Denis Béchet
,
Annie Foret
Logic and Algorithms in Computational Linguistics 2021 (LACompLing2021) , Dec 2021, Montpellier, France
Communication dans un congrès
hal-03527581v1
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A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks
Vincent Picard
,
Anne Siegel
,
Jérémie Bourdon
Article dans une revue
hal-01552190v1
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Two repeated motifs enriched within some enhancers and origins of replication are bound by SETMAR isoforms in human colon cells
Aymeric Antoine-Lorquin
,
Peter Arensburger
,
Ahmed Arnaoty
,
Sassan Asgari
,
Martine Batailler
,
et al.
Article dans une revue
hal-03385429v1
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Classification de séries temporelles basée sur des "shapelets" interprétables par réseaux de neurones antagonistes
Yichang Wang
,
Rémi Emonet
,
Elisa Fromont
,
Simon Malinowski
,
Etienne Menager
,
et al.
CAp 2019 - Conférence sur l'Apprentissage automatique , Jul 2019, Toulouse, France. pp.1-2
Communication dans un congrès
hal-02268004v1
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Incremental learning of iterated dependencies
Denis Béchet
,
Annie Foret
Article dans une revue
hal-03428940v1
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Toward a better understanding of the plant microbiota
Victoria Potdevin
,
Marie Chevallier
,
Ruben Garrido Oter
,
Anne Siegel
,
Stéphane Hacquard
,
et al.
4ème colloque de Génomique Environnementale , GDR Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès
hal-01576743v1
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Inductive Learning from State Transitions over Continuous Domains
Tony Ribeiro
,
Sophie Tourret
,
Maxime Folschette
,
Morgan Magnin
,
Domenico Borzacchiello
,
et al.
Chapitre d'ouvrage
hal-01655644v3
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Localized Random Shapelets
Maël Guilleme
,
Simon Malinowski
,
Romain Tavenard
,
Xavier Renard
Communication dans un congrès
hal-02513295v1
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Adversarial regularization for explainable-by-design time series classification
Yichang Wang
,
Rémi Emonet
,
Elisa Fromont
,
Simon Malinowski
,
Romain Tavenard
ICTAI 2020 - 32th International Conference on Tools with Artificial Intelligence , Nov 2020, online, Greece. pp.1-9
Communication dans un congrès
hal-03025671v1
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On Categorial Grammatical Inference and Logical Information Systems
Denis Béchet
,
Annie Foret
Logic and Algorithms in Computational Linguistics 2018, Series: Advances in Intelligent Systems and Computing, Volume 860 , pp.125-153, 2019,
⟨10.1007/978-3-030-30077-7_6⟩
Chapitre d'ouvrage
hal-02462675v1
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État des lieux MoDaL (Multi-Scale Data Links)
Aurélien Cornet
,
Christian Barillot
,
Olivier Dameron
,
Alban Gaignard
,
Camille Maumet
,
et al.
[Rapport de recherche] IRISA, Inria Rennes. 2020
Rapport
hal-02557351v1
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A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma
Maxime Folschette
,
Vincent Legagneux
,
Arnaud Poret
,
Lokmane Chebouba
,
Carito Guziolowski
,
et al.
Article dans une revue
hal-02095930v4
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Scalable and exhaustive screening of metabolic functions carried out by microbial consortia
Clémence Frioux
,
Enora Fremy
,
Camille Trottier
,
Anne Siegel
ECCB - 2018 - 17th European Conference on Computational Biology , Sep 2018, Athènes, Greece. pp.i934-i943
Communication dans un congrès
hal-01946860v1
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Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks
Sylvain Prigent
,
Clémence Frioux
,
Simon M Dittami
,
Sven Thiele
,
Abdelhalim Larhlimi
,
et al.
Article dans une revue
hal-01449100v1
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Toward the study of metabolic functions in algal holobionts
Claire Lippold
,
Camille Trottier
,
Clémence Frioux
,
Marie Chevallier
,
Simon M Dittami
,
et al.
4ème Colloque de Génomique Environnementale , Sep 2017, Marseille, France
Communication dans un congrès
hal-01576484v1
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L'écologie des systèmes
Damien Eveillard
,
Anne Siegel
,
Philippe Vandenkoornhuyse
Mokrane Bouzeghoub et Rémy Mosseri. Les Big Data à Découvert , CNRS éditions, 2017, 978-2-271-11464-8
Chapitre d'ouvrage
hal-01575603v1
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Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus
Delphine Nègre
,
Méziane Aite
,
Arnaud Belcour
,
Clémence Frioux
,
Loraine Brillet-Guéguen
,
et al.
Article dans une revue
hal-02395080v1
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First landscape of binding to chromosomes for a domesticated mariner transposase in the human genome: diversity of genomic targets of SETMAR isoforms in two colorectal cell lines
Aymeric Antoine-Lorquin
,
Ahmed Arnaoty
,
Sassan Asgari
,
Martine Batailler
,
Linda Beauclair
,
et al.
2017
Pré-publication, Document de travail
hal-01558001v1
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Learning Dynamics with Synchronous, Asynchronous and General Semantics
Tony Ribeiro
,
Maxime Folschette
,
Morgan Magnin
,
Olivier Roux
,
Katsumi Inoue
28th International Conference on Inductive Logic Programming , Fabrizio Riguzzi; Elena Bellodi; Riccardo Zese, Sep 2018, Ferrara, Italy.
⟨10.1007/978-3-319-99960-9_8⟩
Communication dans un congrès
hal-01826564v1
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